When a woman becomes pregnant, the outcome of that pregnancy depends on many things -- including a crucial event that happened while she was still growing inside her own mother's womb. It depends on the quality of the egg cells that were already forming inside her fetal ovaries. The DNA-containing chromosomes in those cells must be cut, spliced and sorted perfectly. In males, the same process produces sperm in the testes but occurs only after puberty.

"If that goes wrong, then you end up with the wrong number of chromosomes in the eggs or sperm," said Neil Hunter, a professor in the Department of Microbiology and Molecular Genetics at the University of California, Davis. "This can result in infertility, miscarriage or the birth of children with genetic diseases."

In a paper published Sept. 24 in the journal Nature, Hunter's team reports a major new discovery about a process that helps safeguard against these mistakes. He has pieced together the choreography of proteins that connect matching chromosome pairs -- ensuring that they are sorted correctly as egg and sperm cells develop and divide.

Hunter's discoveries required methods to watch the molecular events of chromosome recombination unfold with unprecedented detail. This involved genetic engineering in budding yeast -- a model organism that has been used for decades to discover how fundamental cellular processes work.

"The chromosome structures that we studied have changed very little across evolution," Hunter said. "Every protein that we looked at in yeast has a direct counterpart in humans." His findings could improve our understanding of fertility problems and how they are diagnosed and treated in humans.

Forming chromosome crossovers for strong connections

Humans have 46 chromosomes in each of our cells, made up of 23 pairs of matching, "homologous" chromosomes, with one of each pair inherited from each parent. Early in the process of making sperm or eggs, those chromosome pairs line up, and the parental chromosomes break and rejoin to each other. These chromosome exchanges, called "crossovers," serve two important functions.

First, they help ensure that each chromosome that is passed on to the offspring contains a unique mixture of genes from both parents. Crossovers also keep the chromosomes connected in matching pairs. These connections guide the distribution of chromosomes when cells divide to produce eggs and sperm. Maintaining crossover connections is especially crucial in females, Hunter said.

As chromosomes pair up in developing egg or sperm cells, matching DNA strands are exchanged and twined together over a short distance to form a structure called a "double Holliday junction." DNA strands of this structure are then cut to join the chromosomes forming a crossover.

In males, developing immature sperm cells then immediately divide and distribute chromosomes to the sperm. In contrast, egg cells developing in the fetal ovary arrest their development after crossovers have formed. The immature egg cells can remain in suspended animation for decades after birth, until they are activated to undergo ovulation.

Only then does the process lurch back into motion: The egg cell finally divides, and the chromosome pairs that were connected by crossovers are finally separated to deliver a single set of chromosomes to the mature egg. "Maintaining the crossover connections over many years is a major challenge for immature egg cells," Hunter said.

If chromosome pairs aren't connected by at least one crossover, they can lose contact with each other, like two people separated in a jostling crowd. This causes them to segregate incorrectly when the cell finally divides, producing egg cells with extra or missing chromosomes. This can cause infertility, miscarriage or genetic conditions such as Down syndrome, in which a child is born with an extra copy of chromosome 21, leading to cognitive impairment, heart defects, hearing loss and other problems.

From yeast to humans

Hunter has spent years trying to understand how crossovers form and how this process can fail and cause reproductive problems. By studying this process in yeast, researchers can directly visualize molecular events of double-Holliday junction resolution in synchronized populations of cells.

Researchers have identified dozens of proteins that bind and process these junctions. Hunter and then-postdoctoral fellow Shangming Tang (now an assistant professor of biochemistry and molecular genetics at the University of Virginia) used a technique called "real-time genetics" to investigate the function of those proteins. With this method, they made cells degrade one or more specific proteins within the junction-associated structures. They could then analyze the DNA from these cells, to see whether the junctions were resolved and if they formed crossovers. In this way, they built up a picture in which a network of proteins function together to ensure that crossovers are formed.

"This strategy allowed us to answer a question that previously wasn't possible," Hunter said.

They identified key proteins such as cohesin that prevent an enzyme called the STR complex (or Bloom complex in humans) from inappropriately dismantling the junctions before they can form crossovers.

"They protect the double Holliday junction," Hunter said. "That is a key discovery."

This years-long research project in yeast is broadly relevant for human reproduction because the process has changed very little during evolution. Failure to protect double-Holliday junctions may be linked to fertility problems in humans.

In addition to Tang, the postdoc, seven undergraduates in the UC Davis College of Biological Sciences contributed to this work, including Jennifer Koo, Mohammad Pourhosseinzadeh, Emerald Nguyen, Natalie Liu, Christopher Ma, Hanyu Lu and Monica Lee.

Additional authors on the paper include Sara Hariri, Regina Bohn and John E. McCarthy, all members of the Hunter lab.

Hunter's research is funded by the National Institutes of Health and the Howard Hughes Medical Institute. His work has also received funding from the UC Davis Comprehensive Cancer Center, the American Cancer Society, the Concern Foundation for Cancer Research, and the Damon Runyon Cancer Foundation.

Hunter's research on crossover and homologous recombination uses advanced scientific facilities at the university's Proteomics Core Facility, MCB Light Microscopy Imaging Facility, Genome Center, Mouse Biology Program, and the Comprehensive Cancer Center.

Read more …Miscarriages, down syndrome, and infertility all linked to this hidden DNA process

A widely available and affordable drug has been shown to be effective in treating seriously ill COVID-19 patients, according to a new international study led by researchers at the Australian National University (ANU) in collaboration with King's College London.

The study analyzed data from almost 500 patients hospitalized with COVID-19 across six countries. Patients who inhaled heparin were half as likely to require ventilation and had a significantly lower risk of dying compared with those receiving standard care.

Heparin, a drug traditionally injected to treat blood clots, was tested in this study in an inhaled form, targeting the lungs directly. As well as acting as an anticoagulant, heparin has anti-inflammatory and pan-antiviral properties. Earlier research results showed breathing and oxygen levels improved in COVID-19 patients after they inhaled a course of heparin.

The researchers believe the drug could also be useful in fighting other serious respiratory infections such as pneumonia.

Professor Clive Page, Emeritus Professor of Pharmacology at King's who co-led the international study with ANU's Professor van Haren, said: "Inhaled heparin is anti-viral, anti-inflammatory and anti-coagulant. There's no other drug that has that unique combination. We know it's only a matter of time until the next pandemic, and there are still COVID-19 patients who get very sick. This is a great weapon to have up our sleeve."

While the findings highlight the potential of inhaled heparin, further development is required before the treatment can be routinely adopted. The researchers believe the drug could also be useful in fighting other serious respiratory infections such as pneumonia, which can be caused by a range of viruses and bacteria.

According to Professor van Haren, the drug would also be helpful for those with a compromised immune system, such as cancer patients, when they experience a respiratory infection.

Professor Frank van Haren, lead author, ANU and Director of the Intensive Care Unit at the St George Hospital in Sydney, said: "It doesn't matter what kind of respiratory infection the patient is dealing with, the drug -- when inhaled -- will stop it from infecting the patient and from damaging the lungs. We're aiming to conduct another trial in Europe to confirm its effectiveness in fighting other common respiratory infections such as influenza and RSV. And because it's inexpensive, it's much more accessible for those from low-income countries"

The researchers are now also developing an improved formulation of heparin, specifically designed to be given by inhalation.

The research is published in eClinicalMedicine and simultaneously presented of at the European Respiratory Society (ERS) International Congress in Amsterdam on Sunday, September 28, the leading annual gathering for respiratory research.

Read more …Doctors tested a common drug on COVID. The results are stunning

Eating fruit may reduce the effects of air pollution on lung function, according to research presented at the European Respiratory Society Congress in Amsterdam, the Netherlands.

The study was presented by Pimpika Kaewsri, a PhD student from the Centre for Environmental Health and Sustainability at the University of Leicester, UK.

She explains: "Over 90% of the global population is exposed to air pollution levels that exceed WHO guidelines, and ample research shows that exposure to higher air pollution levels is associated with reduced lung function.

"Separately, a healthy diet -- particularly one high in fruits and vegetables -- has been linked to better lung function. We wanted to explore whether a healthy diet or specific food groups could modify or partly mitigate the known adverse effects of air pollution on lung function."

Using UK Biobank data from around 200,000 participants, Kaewsri compared people's dietary patterns -- including their fruit, vegetable and whole grains intake -- with their lung function (FEV1 - the amount of air exhaled in one second) and their exposure to air pollution in the form of fine particulate matter (PM2.5). PM2.5 concentration is the amount of very tiny particles, 2.5 micrometers or smaller, released into the air, for example by vehicle exhausts and industrial processes. The team also accounted for other factors such as age, height, and socioeconomic status.

For every increase in exposure to PM2.5 of five micrograms per cubic meter of air, the team observed a 78.1ml reduction in FEV1 in the low fruit intake group, compared to only a 57.5ml reduction in the high fruit intake group in women.

Kaewsri explains: "Our study confirmed that a healthy diet is linked to better lung function in both men and women regardless of air pollution exposure. And that women who consumed four portions of fruit per day or more appeared to have smaller reductions in lung function associated with air pollution, compared to those who consumed less fruit.

"This may be partly explained by the antioxidant and anti-inflammation compounds naturally present in fruit. These compounds could help mitigate oxidative stress and inflammation caused by fine particles, potentially offsetting some of the harmful effects of air pollution on lung function."

Kaewsri also noted that, in the study population, men generally reported lower fruit intake than women. "This difference in dietary patterns may help explain why the potential protective effect of fruit against air pollution was only observed in women," she adds.

Kaewsri plans to extend the research by exploring whether diet can influence changes in lung function over time.

Professor Sara De Matteis, Chair of the European Respiratory Society's expert group on occupational and environmental health, based at the University of Turin, Italy, who was not involved in the research said: "This study confirms the potential respiratory health benefits of a healthy diet, especially rich in fresh fruit intake.

"However, access to a healthy diet is not equally distributed in the population and, even if the authors adjusted for socioeconomic status, some residual confounding cannot be ruled out.

"A healthy plant-rich diet should be promoted in the population starting from primary school, not only for preventing chronic diseases, but also to reduce the carbon-footprint of meat-rich diets.

"This does not exempt governments from continuing with environmental policies to reduce air pollution to as low as possible, given there are no safe exposure levels, and it does not transfer their accountability to individuals whose diet choices are often constrained by economic needs."

Read more …Fruit might be the surprising key to healthier lungs

Findings from a trial comparing the real-world effectiveness of asthma inhalers could reshape how children with asthma are treated.

In the first randomized controlled trial to investigate the use of a 2-in-1 inhaler as the sole reliever therapy for children aged 5 to 15, an international team found the combined treatment to be more effective than salbutamol, the current standard for asthma symptom relief in children, with no additional safety concerns.

The results show that using a single 2-in-1 anti-inflammatory reliever inhaler - which combines the inhaled corticosteroid (ICS) budesonide and the fast-acting bronchodilator formoterol - reduced children's asthma attacks by an average of 45%, compared to the widely-used salbutamol inhaler.

Asthma attacks in children may be life-threatening and reducing their frequency and severity is a public health priority.

The 2-in-1 budesonide-formoterol inhaler is widely recommended as the preferred reliever treatment for adults, but children are still usually prescribed salbutamol.

Researchers say the findings, published on Sept. 27 in The Lancet, provide the evidence needed to bring children's global asthma guidelines into line with adults', which could benefit millions of children around the world with mild-to-moderate asthma.

The CARE study (Children's Anti-inflammatory REliever) was designed and led by the Medical Research Institute of New Zealand (MRINZ), in collaboration with Imperial College London, University of Otago Wellington, Starship Children's Hospital, and the University of Auckland. It recruited 360 children across New Zealand who were then randomly assigned to receive either budesonide-formoterol or salbutamol for on-demand symptom relief.

The trial lasted a year and the budesonide-formoterol reliever resulted in a lower rate of asthma attacks than salbutamol reliever, with rates of 0.23 versus 0.41 per participant per year. This means that for every 100 children with mild asthma who are switched from salbutamol to a 2-in-1 budesonide-formoterol inhaler, there would be 18 fewer asthma attacks per year.Importantly, the study also confirmed the safety of the combined-inhaler approach, with no significant differences in children's growth, lung function, or asthma control between the two groups.

Dr Lee Hatter, lead author of the study and Senior Clinical Research Fellow at the MRINZ, said: "This is a key step in addressing the evidence gap that exists between asthma management in adults and children. For the first time, we have demonstrated that the budesonide-formoterol 2-in-1 inhaler, used as needed for symptom relief, can significantly reduce asthma attacks in children with mild asthma. This evidence-based treatment could lead to improved asthma outcomes for children worldwide."

Professor Richard Beasley, Director of MRINZ and senior author of the study, said: "Implementing these findings could be transformative for asthma management on a global scale. The evidence that budesonide-formoterol is more effective than salbutamol in preventing asthma attacks in children with mild asthma has the potential to redefine the global standard of asthma management."

The burden of asthma in the estimated 113 million children and adolescents with asthma worldwide is substantial. The latest study builds on previous studies in adults led by MRINZ researchers (see detail in Notes, below) which shaped international asthma treatment guidelines. These findings contributed to the recommended use of the 2-in-1 ICS-formoterol reliever inhaler as the preferred reliever treatment for adults with asthma around the world.

The incorporation of findings from the CARE study into global asthma treatment strategies could help reduce disparities in care and ensure that more children access effective, evidence-based treatments.

The researchers say that global health organizations have long advocated for child-targeted asthma interventions, and their findings provide crucial evidence to support those efforts.

However, the authors acknowledge some limitations of the clinical trial. It was undertaken during the COVID-19 pandemic, during which stringent public health measures and fewer circulating respiratory viruses contributed to the lower than predicted rate of severe asthma attacks. The authors also acknowledge the challenges with the identification of asthma attacks in children, and the potential bias with the lack of blinding of the randomized treatments. They say though that the study's findings are generalizable to clinical practice due to its pragmatic, real-world design.

Professor Andrew Bush, from Imperial College London, senior respiratory pediatrician and co-author of the CARE study, said: "Having an asthma attack can be very scary for children and their parents. I'm so pleased that we've been able to prove that an inhaler that significantly reduces attacks - already a game-changer for adults -- is safe for children with mild asthma too. We believe this will transform asthma care worldwide and are excited to be building on this work with the CARE UK study."

Professor Helen Reddel, Chair of the Science Committee of the Global Initiative for Asthma (GINA), commented on the global significance of the study, saying that it fills a critically important gap for asthma management globally. Professor Reddel said: "Asthma attacks have a profound impact on children's physical, social and emotional development and their prevention is a high priority for asthma care. It is in childhood, too, that lifelong habits are established, particularly reliance on traditional medications like salbutamol that only relieve symptoms and don't prevent asthma attacks."

Professor Bob Hancox, Medical Director of the New Zealand Asthma and Respiratory Foundation, said: "This is a very important study for children with mild asthma. We have known for some time that 2-in-1 budesonide/formoterol inhalers are better than the traditional reliever treatment in adults, but this had not been tested in children. This research shows that this 2-in-1 inhaler is effective and safe for children as young as 5. This information will help to reduce the burden of asthma for many children, and both they and their families will breathe easier because of it."

Study key points:

  1. The CARE study is the first randomized controlled trial comparing ICS-formoterol anti-inflammatory reliever inhaler treatment with salbutamol reliever inhaler treatment, in children aged five to 15 years with asthma.
  2. Budesonide-formoterol demonstrated a significant reduction in asthma attacks, with a 45% decrease in the rate of attacks compared to salbutamol (0.23 vs 0.41 attacks per participant per year; relative rate 0.55, 95% CI 0.35-0.86, p=0.01).
  3. These findings are consistent with established benefits seen in adults, where ICS-formoterol has become the preferred reliever treatment for asthma management.
  4. The study found no safety concerns regarding the use of a combined inhaled steroid treatment in children, with no adverse effects on growth or lung function.
  5. This study provides compelling evidence that switching from a salbutamol reliever inhaler to a budesonide-formoterol reliever inhaler can help prevent asthma attacks in children with mild asthma as young as five, which could lead to a potential shift in asthma treatment globally

The study was made possible by the generous support of the Health Research Council of New Zealand, Cure Kids (New Zealand), and the Barbara Basham Medical Charitable Trust managed by Perpetual Guardian. Symbicort Rapihalers for the trial were provided by AstraZeneca.

Read more …New inhaler halves childhood asthma attacks

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